2014

Matsubara K, Koehling R, Schoenenberger B, Kouril T, Esser D, Braesen C, Siebers B, Wohlgemuth R (2014). One-step synthesis of 2-keto-3-deoxy-d-gluconate by biocatalytic dehydration of d-gluconate. J Biotechnol. 2014 Jul 14. pii: S0168-1656(14)00286-7. doi: 10.1016/j.jbiotec.2014.06.005
[PubMed]

Gauss D, Schoenenberger B, Wohlgemuth R (2014). Chemical and enzymatic methodologies for the synthesis of enantiomerically pure glyceraldehyde 3-phosphates. Carbohydr Res. 2014 May 7;389:18-24. doi: 10.1016/j.carres.2013.12.023.
[PubMed]

Braesen C, Esser D, Rauch B, Siebers B (2014). Carbohydrate metabolism in Archaea: current insights into unusual enzymes and pathways and their regulation.Microbiol Mol Biol Rev. 2014 Mar;78(1):89-175. doi: 10.1128/MMBR.00041-13.
[PubMed]

2013

Reimann J, Esser D, Orell A, Amman F, Pham TK, Noirel J, Lindas AC, Bernander R, Wright PC, Siebers B, Albers SV (2013). Archaeal Signal Transduction: Impact of Protein Phosphatase Deletions on Cell Size, Motility and Energy Metabolism in Sulfolobus acidocaldarius . Mol Cell Proteomics. 2013 Sep 27.
[PubMed]

Kort JC, Esser D, Pham TK, Noirel J, Wright PC, Siebers B (2013). A cool tool for hot and sour Archaea: Proteomics of Sulfolobus solfataricus. Proteomics.2013 Oct;13(18-19):2831-50.
[PubMed]

Kouril T, Esser D, Kort J, Westerhoff H, Siebers B, Snoep J (2013) Intermediate instability at high temperature leads to low pathway efficiency for an in vitro reconstituted system of gluconeogenesis in Sulfolobus solfataricus, FEBS J., 280(18):4666-80
[PubMed]

Kouril T, Wieloch P, Reimann J, Wagner M, Zaparty M, Albers SV, Schomburg D, Ruoff P, Siebers B (2013). Unraveling the function of the two Entner-Doudoroff branches in the thermoacidophilic Crenarchaeon Sulfolobus solfataricus P2. FEBS J. 280(4):1126-38
[PubMed]

Esser D, Kouril T, Talfournier F, Polkowska J, Schrader T, Bräsen C, Siebers B (2013). Unraveling the function of paralogs of the aldehyde dehydrogenase super family from Sulfolobus solfataricus . Extremophiles 17(2):205-16.
[PubMed]

2012

Ulas T, Riemer SA, Zaparty M, Siebers B, Schomburg D (2012). Genome-scale reconstruction and analysis of the metabolic network in the hyperthermophilic archaeon Sulfolobus solfataricus. PLoS One.;7(8):e43401
[PubMed]

Esser D, Pham TK, Reimann J, Albers SV, Siebers B, Wright PC (2012). Change of carbon source causes dramatic effects in the phospho-proteome of the archaeon Sulfolobus solfataricus. J Proteome Res. 11(10):4823-33.
[PubMed]

2011

Haferkamp P, Kutschki S, Treichel J, Hemeda H, Sewczyk K, Hoffmann D, Zaparty M, Siebers. B (2011) An additional glucose dehydrogenase from Sulfolobus solfataricus: Fine-tuning of sugar degradation? Biochemical Society Transactions 39, 77-81.
[PubMed]

Esser D, Kouril T, Zaparty M, Sierocinski P, Chan PP, Lowe T, Van der Oost J, Albers SV, Schomburg D, Makarova KS, Siebers B (2011). Functional curation of the Sulfolobus solfataricus P2 and S. acidocaldarius 98-3 complete genome sequences. Extremophiles.15:711-712
[PubMed]

2010

Pham TK, Sierocinski P, van der Oost J, Wright PC (2010) Quantitative Proteomic Analysis of Sulfolobus solfataricus Membrane Proteins, J Proteome Res, 5;9(2):1165-72.
[PubMed]

Zaparty M*, Esser D*, Gertig S*, Haferkamp P*, Kouril T*, Manica A, Pham TK*, Reimann J, Schreiber K, Sierocinski P*, Teichmann D, Van Wolferen M, Von Jan M*, Wieloch P*, Albers SV, Driessen AJM, Klenk HP, Schleper C, Schomburg D, Van der Oost J, Wright PC, Siebers B (2010) “Hot standards” for the thermoacidophilic archaeon Sulfolobus solfataricus. Extremophiles, 14(1):119-42. * Equal contributions.
[PubMed]

Berkner S, Wlodkowski A., Albers S.-V., Lipps G (2010). Inducible and constitutive promoters for genetic systems in Sulfolobus acidocaldarius. Extremophiles 14, 249-259.
[PubMed]

2009

Ni XY, Drengstig T, Ruoff P (2009) The control of the controller: Molecular mechanisms for robust perfect adaptation and temperature compensation. Biophys. J., 2;97(5):1244-53
[PubMed]

Albers SV, Birkeland NK, Driessen AJM, Gertig S, Haferkamp P, Klenk HP, Kouril T, Manica A, Pham TK, Ruoff P, Schleper C, Schomburg D, Sharkey KJ, Siebers B, Sierocinski P, Steuer R, Van der Oost J, Westerhoff HV, Wieloch P, Wright PC, Zaparty M (2009) SulfoSYS - Sulfolobus Systems Biology: towards a Silicon Cell Model for the central carbohydrate metabolism of the Archaeon Sulfolobus solfataricus under temperature variation. Biochem. Soc. Trans. 37, 58–64 (DOI:10.1042/BST0370058)
[PubMed]

Westerhoff HV, Kolodkin A, Conradie R, Wilkinson SJ, Bruggeman FJ, Krab K, van Schuppen JH, Hardin H, Bakker BM, Moné MJ, Rybakova KN, Eijken M, van Leeuwen HJ, Snoep JL (2009) Systems biology towards life in silico: mathematics of the control of living cells. J Math Biol, 58, 7-34
[PubMed]

Wagner, M., Berkner, S., Ajon, M., Driessen, AJM and S.V. Albers (2009) Expanding and understanding the genetic toolbox of the hyperthermophilic genus Sulfolobus. Biochem Society Transactions, 37:97-101.
[PubMed]

2008

Drengstig T, Ueda HR, Ruoff P (2008) Predicting perfect adaptation motifs in reaction kinetic networks. J. Phys. Chem. B, 112:16752-16758
[PubMed]

Ettema TJ, Ahmed H, Geerling AC, Van der Oost J, Siebers B (2008) The non-phosphorylating glyceraldehyde-3-phosphate dehydrogenase (GAPN) of Sulfolobus solfataricus: a key-enzyme of the semi-phosphorylative branch of the Entner-Doudoroff pathway. Extremophiles, 12, 75-88
[PubMed]

Albers SV, Driessen AJM (2008) Conditions for gene disruption by homologous recombination of exogenous DNA into the Sulfolobus solfataricus genome. Archaea, 2:145–149
[PubMed]

2007

Ruoff P, Zakhartsev M, Westerhoff HV (2007) Temperature Compensation through Systems Biology. FEBS J., 274(4), 940-950
[PubMed]