2009

Ni XY*, Kjosmoen T*, Zaparty M*, Haferkamp P*, Kouril T*, Albers S.V., Gertig S, Manica A, Pham Trong K, Schleper C, Schomburg D, Sierocinski P, Steuer R, van der Oost J, Westerhoff HV, Wieloch P, Wright PC, Snoep J, Siebers B, Ruoff P. SulfoSYS (Sulfolobus Systems Biology): A reaction kinetic model of the branched Entner-Doudoroff pathway in Sulfolobus solfataricus with temperature variation, FEBS J, submitted
* Equal contributions.

Pham TK, Sierocinski P, van der Oost J, Wright PC (2009) Quantitative Proteomic Analysis of Sulfolobus solfataricus Membrane Proteins, J Proteome Res, accepted

Zaparty M*, Esser D*, Gertig S*, Haferkamp P*, Kouril T*, Manica A, Pham TK*, Reimann J, Schreiber K, Sierocinski P*, Teichmann D, Van Wolferen M, Von Jan M*, Wieloch P*, Albers SV, Driessen AJM, Klenk HP, Schleper C, Schomburg D, Van der Oost J, Wright PC, Siebers B (2009) “Hot standards” for the thermoacidophilic archaeon Sulfolobus solfataricus. Extremophiles, Epub ahead of print, DOI: 10.1007/s00792-009-0280-0
* Equal contributions.
[PubMed]

Ni XY, Drengstig T, Ruoff P (2009) The control of the controller: Molecular mechanisms for robust perfect adaptation and temperature compensation. Biophys. J., Epub ahead of print, DOI:10.1016/j.bpj.2009.06.030
[PubMed]

Albers SV, Birkeland NK, Driessen AJM, Gertig S, Haferkamp P, Klenk HP, Kouril T, Manica A, Pham TK, Ruoff P, Schleper C, Schomburg D, Sharkey KJ, Siebers B, Sierocinski P, Steuer R, Van der Oost J, Westerhoff HV, Wieloch P, Wright PC, Zaparty M (2009) SulfoSYS - Sulfolobus Systems Biology: towards a Silicon Cell Model for the central carbohydrate metabolism of the Archaeon Sulfolobus solfataricus under temperature variation. Biochem. Soc. Trans. 37, 58–64 (DOI:10.1042/BST0370058)
[PubMed]

Westerhoff HV, Kolodkin A, Conradie R, Wilkinson SJ, Bruggeman FJ, Krab K, van Schuppen JH, Hardin H, Bakker BM, Moné MJ, Rybakova KN, Eijken M, van Leeuwen HJ, Snoep JL (2009) Systems biology towards life in silico: mathematics of the control of living cells. J Math Biol, 58, 7-34
[PubMed]

Wagner, M., Berkner, S., Ajon, M., Driessen, AJM and S.V. Albers (2009) Expanding and understanding the genetic toolbox of the hyperthermophilic genus Sulfolobus. Biochem Society Transactions, 37:97-101.
[PubMed]

2008

Drengstig T, Ueda HR, Ruoff P (2008) Predicting perfect adaptation motifs in reaction kinetic networks. J. Phys. Chem. B, 112:16752-16758
[PubMed]

Ettema TJ, Ahmed H, Geerling AC, Van der Oost J, Siebers B (2008) The non-phosphorylating glyceraldehyde-3-phosphate dehydrogenase (GAPN) of Sulfolobus solfataricus: a key-enzyme of the semi-phosphorylative branch of the Entner-Doudoroff pathway. Extremophiles, 12, 75-88
[PubMed]

Albers SV, Driessen AJM (2008) Conditions for gene disruption by homologous recombination of exogenous DNA into the Sulfolobus solfataricus genome. Archaea, 2:145–149
[PubMed]

2007

Ruoff P, Zakhartsev M, Westerhoff HV (2007) Temperature Compensation through Systems Biology. FEBS J., 274(4), 940-950
[PubMed]